[hisano]

Dear all,

A minimization job was terminated with an error message:

————————————————————————–
A system call failed during shared memory initialization that should
not have. It is likely that your MPI job will now either abort or
experience performance degradation.

Local host: vboostmini18.local
System call: unlink(2) /var/folders/pk/mpctxw0s64zgybt1g46ck9qw0000gn/T//ompi.vbooostmini2018b.501/pid.1696/1/vader_segment.vbooostmini2018b.23370001.2
Error: No such file or directory (errno 2)
————————————————————————–

However, dcd and rst files were created, and the next job (equilibration_1) started to run. My question is, is this calculation valid or should I solve the memory initialization problem?

PS

Attached files are different minimization jobs, one for my protein and the other the tutorial protein. Both are terminated with the same error messages. (I could not delete uploaded files after to leave one.)

Attachments:

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[jwjung]

I checked your attached files, and the results seem to be okay.