select certain ligand with ion binding from a large membrane bilayer Viewing 1 reply thread Author Posts Actions Sep 26th, 2021 at 6:57 pm #16705 nursyaParticipant Hello, what exactly the specific command to be executed to select a ligand and nearby ions on big membrane bilayer? then to save as vmd video Nur Actions Sep 28th, 2021 at 12:33 pm #16723 ckobayashiModerator Hello, GENESIS (crd_convert) does not have the function selecting a ligand with nearby atoms. I think using ‘within’ in vmd is a good idea. Kobayashi Viewing 1 reply thread You must be logged in to reply to this topic.