We show tutorials for basic and advanced MD simulations with GENESIS. These tutorials are useful for not only GENESIS beginners but also experts who want to know newly-introduced functions. Before starting the tutorials, the users are recommended to get VMD and gnuplot, both of which are free software, to visualize MD trajectories and plot data. GENESIS should be installed in your computer with OpenMPI. Note that in the tutorial we will use various linux commands such as
awk, and also utilize a pipe (
|) to combine the commands. If you do not know their basic usage, learn them in advance.
- Basic molecular dynamics simulations
- Replica-exchange molecular dynamics simulations
- Advanced molecular dynamics simulations
- Trajectory analysis tools